Escherichia dysenteriae
Isolate HQ 5S/16S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia dysenteriae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli O157:H7; x__Escherichia coli O157:H7 str. K2845
NCBI Strain Identifiers K2845
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002949675.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 1.48%
CheckM Strain Heterogeneity 87.5
5S Count 6
16S Count 1
23S Count 0
tRNA Count 18
Contig Count 127
N50 Contigs 152,544 bp
Longest Contig 505,550 bp
Scaffold Count 127
N50 Scaffolds 152,544 bp
Longest Scaffold 505,550 bp
Genome Size 5,383,000 bp
Protein Count 5,207
Coding Density 87.71%
GC Percentage 50.45%
Ambiguous Bases 2
GTDB representative GCA_002949675.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name EcK2845
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02353101
Country USA
Date 2014-04-08
Genbank Assembly Accession GCA_000618565.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,704
Refseq Category na
Seq Rel Date 2014/04/08
Spanned Gaps 0
Species Taxid 562
SSU Count 2
Submitter CDC
Taxid 1446677
Total Gap Length 0
Translation Table 11
tRNA Count (total) 86
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JHIQ00000000.1