Escherichia dysenteriae
Isolate HQ 16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia dysenteriae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli O169:H41; x__Escherichia coli O169:H41 str. F9792
NCBI Strain Identifiers F9792
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002949675.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.19%
CheckM Strain Heterogeneity 25.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 146
N50 Contigs 126,778 bp
Longest Contig 437,600 bp
Scaffold Count 112
N50 Scaffolds 160,671 bp
Longest Scaffold 437,944 bp
Genome Size 4,923,809 bp
Protein Count 4,632
Coding Density 87.72%
GC Percentage 50.42%
Ambiguous Bases N/A
GTDB representative GCA_002949675.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name EcF9792
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02353082
Country USA
Date 2014-4-8
Genbank Assembly Accession GCA_000618205.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,997
Refseq Category na
Seq Rel Date 2014/04/08
Spanned Gaps 34
Species Taxid 562
SSU Count 1
Submitter CDC
Taxid 1446702
Total Gap Length 5742
Translation Table 11
tRNA Count (total) 77
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JHJJ00000000.1