Escherichia dysenteriae
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia dysenteriae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli O157:H7; x__Escherichia coli O157:H7 str. F7410
NCBI Strain Identifiers F7410
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002949675.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 277
N50 Contigs 133,847 bp
Longest Contig 363,577 bp
Scaffold Count 216
N50 Scaffolds 169,687 bp
Longest Scaffold 363,577 bp
Genome Size 5,387,265 bp
Protein Count 5,246
Coding Density 87.16%
GC Percentage 50.23%
Ambiguous Bases 32
GTDB representative GCA_002949675.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name EcF7410
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02353081
Country USA
Date 2014-4-8
Genbank Assembly Accession GCA_000618145.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,761
Refseq Category na
Seq Rel Date 2014/04/08
Spanned Gaps 61
Species Taxid 562
SSU Count 1
Submitter CDC
Taxid 1446659
Total Gap Length 10843
Translation Table 11
tRNA Count (total) 84
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JHJK00000000.1