Escherichia dysenteriae
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia dysenteriae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli O157:H7; x__Escherichia coli O157:H7 str. F7384
NCBI Strain Identifiers F7384
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002949675.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 232
N50 Contigs 148,205 bp
Longest Contig 440,599 bp
Scaffold Count 182
N50 Scaffolds 171,026 bp
Longest Scaffold 440,599 bp
Genome Size 5,274,592 bp
Protein Count 5,094
Coding Density 87.30%
GC Percentage 50.26%
Ambiguous Bases 8
GTDB representative GCA_002949675.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name EcF7384
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02353080
Country USA
Date 2014-4-8
Genbank Assembly Accession GCA_000618065.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,580
Refseq Category na
Seq Rel Date 2014/04/08
Spanned Gaps 50
Species Taxid 562
SSU Count 1
Submitter CDC
Taxid 1446658
Total Gap Length 8861
Translation Table 11
tRNA Count (total) 76
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JHJL00000000.1