Escherichia dysenteriae
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia dysenteriae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli O157:H7; x__Escherichia coli O157:H7 str. F6749
NCBI Strain Identifiers F6749
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002949675.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.33%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 263
N50 Contigs 146,146 bp
Longest Contig 374,785 bp
Scaffold Count 194
N50 Scaffolds 149,221 bp
Longest Scaffold 374,785 bp
Genome Size 5,343,061 bp
Protein Count 5,150
Coding Density 86.98%
GC Percentage 50.25%
Ambiguous Bases 17
GTDB representative GCA_002949675.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name EcF6749
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02353075
Country USA
Date 2014-4-8
Genbank Assembly Accession GCA_000618045.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,680
Refseq Category na
Seq Rel Date 2014/04/08
Spanned Gaps 69
Species Taxid 562
SSU Count 1
Submitter CDC
Taxid 1446653
Total Gap Length 12858
Translation Table 11
tRNA Count (total) 82
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JHJQ00000000.1