Escherichia flexneri
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli O111:NM; x__Escherichia coli O111:NM str. 04-3211
NCBI Strain Identifiers 04-3211
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.89%
CheckM Contamination 0.08%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 303
N50 Contigs 90,358 bp
Longest Contig 376,352 bp
Scaffold Count 191
N50 Scaffolds 104,498 bp
Longest Scaffold 376,352 bp
Genome Size 5,081,392 bp
Protein Count 4,942
Coding Density 86.94%
GC Percentage 50.39%
Ambiguous Bases 16
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Ec04-3211
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02352900
Country USA
Date 2014-4-7
Genbank Assembly Accession GCA_000617265.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,407
Refseq Category na
Seq Rel Date 2014/04/07
Spanned Gaps 112
Species Taxid 562
SSU Count 1
Submitter CDC
Taxid 1446514
Total Gap Length 16314
Translation Table 11
tRNA Count (total) 77
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JHNS00000000.1