Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli O121:H19; x__Escherichia coli O121:H19 str. 03-3227
NCBI Strain Identifiers 03-3227
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.62%
CheckM Contamination 0.36%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 267
N50 Contigs 122,217 bp
Longest Contig 308,176 bp
Scaffold Count 202
N50 Scaffolds 135,113 bp
Longest Scaffold 424,742 bp
Genome Size 5,125,621 bp
Protein Count 4,949
Coding Density 87.23%
GC Percentage 50.43%
Ambiguous Bases 7
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Ec03-3227
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02352895
Country USA
Date 2014-4-7
Genbank Assembly Accession GCA_000617185.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,401
Refseq Category na
Seq Rel Date 2014/04/07
Spanned Gaps 65
Species Taxid 562
SSU Count 1
Submitter CDC
Taxid 1446552
Total Gap Length 11367
Translation Table 11
tRNA Count (total) 77
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JHNX00000000.1