Escherichia dysenteriae
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia dysenteriae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli O157:H7; x__Escherichia coli O157:H7 str. 2011EL-2099
NCBI Strain Identifiers 2011EL-2099
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002949675.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.33%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 229
N50 Contigs 146,400 bp
Longest Contig 374,783 bp
Scaffold Count 175
N50 Scaffolds 148,681 bp
Longest Scaffold 374,783 bp
Genome Size 5,349,261 bp
Protein Count 5,172
Coding Density 87.26%
GC Percentage 50.29%
Ambiguous Bases N/A
GTDB representative GCA_002949675.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Ec2011EL-2099
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02353046
Country USA
Date 2014-4-7
Genbank Assembly Accession GCA_000616705.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,680
Refseq Category na
Seq Rel Date 2014/04/07
Spanned Gaps 54
Species Taxid 562
SSU Count 1
Submitter CDC
Taxid 1446632
Total Gap Length 9753
Translation Table 11
tRNA Count (total) 82
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JHKT00000000.1