Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli O111:NM; x__Escherichia coli O111:NM str. 2011C-3573
NCBI Strain Identifiers 2011C-3573
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.59%
CheckM Contamination 0.08%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 265
N50 Contigs 92,050 bp
Longest Contig 290,473 bp
Scaffold Count 186
N50 Scaffolds 103,983 bp
Longest Scaffold 290,473 bp
Genome Size 5,166,853 bp
Protein Count 5,060
Coding Density 86.91%
GC Percentage 50.31%
Ambiguous Bases 12
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Ec2011C-3573
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02353029
Country USA
Date 2014-4-7
Genbank Assembly Accession GCA_000616265.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,519
Refseq Category na
Seq Rel Date 2014/04/07
Spanned Gaps 79
Species Taxid 562
SSU Count 1
Submitter CDC
Taxid 1446530
Total Gap Length 13430
Translation Table 11
tRNA Count (total) 89
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JHLQ00000000.1