Escherichia dysenteriae
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia dysenteriae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli O157:H7; x__Escherichia coli O157:H7 str. 2011EL-2108
NCBI Strain Identifiers 2011EL-2108
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002949675.1)
Genome Characteristics
CheckM Completeness 99.93%
CheckM Contamination 0.33%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 283
N50 Contigs 127,925 bp
Longest Contig 374,649 bp
Scaffold Count 208
N50 Scaffolds 133,535 bp
Longest Scaffold 374,649 bp
Genome Size 5,313,412 bp
Protein Count 5,111
Coding Density 86.84%
GC Percentage 50.24%
Ambiguous Bases 6
GTDB representative GCA_002949675.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Ec2011EL-2108
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02353053
Country USA
Date 2014-4-7
Genbank Assembly Accession GCA_000615965.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,629
Refseq Category na
Seq Rel Date 2014/04/07
Spanned Gaps 75
Species Taxid 562
SSU Count 1
Submitter CDC
Taxid 1446639
Total Gap Length 13236
Translation Table 11
tRNA Count (total) 82
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JHKM00000000.1