Escherichia dysenteriae
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia dysenteriae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli O157:H7; x__Escherichia coli O157:H7 str. 2011EL-2107
NCBI Strain Identifiers 2011EL-2107
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002949675.1)
Genome Characteristics
CheckM Completeness 99.93%
CheckM Contamination 0.33%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 258
N50 Contigs 124,483 bp
Longest Contig 374,649 bp
Scaffold Count 181
N50 Scaffolds 140,147 bp
Longest Scaffold 503,148 bp
Genome Size 5,308,456 bp
Protein Count 5,086
Coding Density 86.84%
GC Percentage 50.25%
Ambiguous Bases 9
GTDB representative GCA_002949675.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Ec2011EL-2107
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02353052
Country USA
Date 2014-4-7
Genbank Assembly Accession GCA_000615925.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,620
Refseq Category na
Seq Rel Date 2014/04/07
Spanned Gaps 77
Species Taxid 562
SSU Count 1
Submitter CDC
Taxid 1446638
Total Gap Length 13913
Translation Table 11
tRNA Count (total) 83
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JHKN00000000.1