Escherichia dysenteriae
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia dysenteriae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli O145:NM; x__Escherichia coli O145:NM str. 2010C-3526
NCBI Strain Identifiers 2010C-3526
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002949675.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.41%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 309
N50 Contigs 115,329 bp
Longest Contig 257,753 bp
Scaffold Count 220
N50 Scaffolds 133,161 bp
Longest Scaffold 268,056 bp
Genome Size 5,433,451 bp
Protein Count 5,276
Coding Density 87.09%
GC Percentage 50.37%
Ambiguous Bases 12
GTDB representative GCA_002949675.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Ec2010C-3526
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02352974
Country USA
Date 2014-04-07
Genbank Assembly Accession GCA_000615415.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,765
Refseq Category na
Seq Rel Date 2014/04/07
Spanned Gaps 89
Species Taxid 562
SSU Count 1
Submitter CDC
Taxid 1446596
Total Gap Length 17471
Translation Table 11
tRNA Count (total) 78
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JHFN00000000.1