Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia dysenteriae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli O145:NM; x__Escherichia coli O145:NM str. 2010C-3521
NCBI Strain Identifiers 2010C-3521
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002949675.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 1.31%
CheckM Strain Heterogeneity 70.59
5S Count 3
16S Count 0
23S Count 0
tRNA Count 18
Contig Count 99
N50 Contigs 151,645 bp
Longest Contig 292,272 bp
Scaffold Count 99
N50 Scaffolds 151,645 bp
Longest Scaffold 292,272 bp
Genome Size 5,342,338 bp
Protein Count 5,193
Coding Density 87.99%
GC Percentage 50.47%
Ambiguous Bases 4
GTDB representative GCA_002949675.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name Ec2010C-3521
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02352973
Country USA
Date 2014-4-7
Genbank Assembly Accession GCA_000615385.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,575
Refseq Category na
Seq Rel Date 2014/04/07
Spanned Gaps 0
Species Taxid 562
SSU Count 4
Submitter CDC
Taxid 1446595
Total Gap Length 0
Translation Table 11
tRNA Count (total) 84
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JHFO00000000.1