Escherichia dysenteriae
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia dysenteriae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli O157:H7; x__Escherichia coli O157:H7 str. 2011EL-2288
NCBI Strain Identifiers 2011EL-2288
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002949675.1)
Genome Characteristics
CheckM Completeness 99.93%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 254
N50 Contigs 183,922 bp
Longest Contig 440,600 bp
Scaffold Count 193
N50 Scaffolds 183,922 bp
Longest Scaffold 440,600 bp
Genome Size 5,327,667 bp
Protein Count 5,159
Coding Density 87.04%
GC Percentage 50.16%
Ambiguous Bases 3
GTDB representative GCA_002949675.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Ec2011EL-2288
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02353061
Country USA
Date 2014-4-7
Genbank Assembly Accession GCA_000614085.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,664
Refseq Category na
Seq Rel Date 2014/04/07
Spanned Gaps 61
Species Taxid 562
SSU Count 1
Submitter CDC
Taxid 1446647
Total Gap Length 10104
Translation Table 11
tRNA Count (total) 86
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JHKE00000000.1