Phocaeicola barnesiae
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Bacteroidales; f__Bacteroidaceae; g__Phocaeicola; s__Phocaeicola barnesiae
Filtered NCBI Taxonomy d__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Bacteroidaceae; g__Bacteroides; s__Bacteroides barnesiae
Unfiltered NCBI Taxonomy d__Bacteria; x__FCB group; x__Bacteroidetes/Chlorobi group; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Bacteroidaceae; g__Bacteroides; s__Bacteroides barnesiae; x__Bacteroides barnesiae DSM 18169 = JCM 13652
NCBI Strain Identifiers JCM 13652
GTDB Type Material Designation type strain of species
GTDB Representative of Species False (representative is GCA_000374585.1)
Genome Characteristics
CheckM Completeness 97.53%
CheckM Contamination 0.44%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 2
23S Count 2
tRNA Count 19
Contig Count 65
N50 Contigs 157,083 bp
Longest Contig 372,400 bp
Scaffold Count 65
N50 Scaffolds 157,083 bp
Longest Scaffold 372,400 bp
Genome Size 3,628,546 bp
Protein Count 3,426
Coding Density 88.70%
GC Percentage 46.84%
Ambiguous Bases N/A
GTDB representative GCA_000374585.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM61364v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMD00015967
Country None
Date 2014-03-31
Genbank Assembly Accession GCA_000613645.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 3,034
Refseq Category na
Seq Rel Date 2014/03/31
Spanned Gaps 0
Species Taxid 376804
SSU Count 2
Submitter The University of Tokyo
Taxid 1121094
Total Gap Length 0
Translation Table 11
tRNA Count (total) 74
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master BAJJ00000000.1