Pandoraea pnomenusa
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Pandoraea; s__Pandoraea pnomenusa
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Pandoraea; s__Pandoraea pnomenusa
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Pandoraea; s__Pandoraea pnomenusa
NCBI Strain Identifiers RB38
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000767615.3)
Genome Characteristics
CheckM Completeness 99.15%
CheckM Contamination 0.16%
CheckM Strain Heterogeneity 0.0
5S Count 4
16S Count 4
23S Count 4
tRNA Count 20
Contig Count 1
N50 Contigs 5,378,916 bp
Longest Contig 5,378,916 bp
Scaffold Count 1
N50 Scaffolds 5,378,916 bp
Longest Scaffold 5,378,916 bp
Genome Size 5,378,916 bp
Protein Count 4,750
Coding Density 87.28%
GC Percentage 64.76%
Ambiguous Bases N/A
GTDB representative GCA_000767615.3
GTDB representative of species False
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM60406v3
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02693467
Country Malaysia
Date 2016-3-21
Genbank Assembly Accession GCA_000604065.3
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Soil
Latitude Longitude 3.003361 N 101.659194 E
Molecule Count 1
CDS Count 4,703
Refseq Category na
Seq Rel Date 2016/03/21
Spanned Gaps 0
Species Taxid 93220
SSU Count 4
Submitter University of Malaya
Taxid 93220
Total Gap Length 0
Translation Table 11
tRNA Count (total) 67
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master None