Hylemonella gracilis_A
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Hylemonella; s__Hylemonella gracilis_A
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Comamonadaceae; g__Hylemonella; s__Hylemonella gracilis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Comamonadaceae; g__Hylemonella; s__Hylemonella gracilis; x__Hylemonella gracilis str. Niagara R
NCBI Strain Identifiers Niagara R
GTDB Type Material Designation not type material
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 99.33%
CheckM Contamination 0.47%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 18
N50 Contigs 400,132 bp
Longest Contig 668,920 bp
Scaffold Count 2
N50 Scaffolds 3,815,931 bp
Longest Scaffold 3,815,931 bp
Genome Size 3,821,615 bp
Protein Count 3,492
Coding Density 90.46%
GC Percentage 64.93%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name HgNR1.0
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02614613
Country USA: Upper Niagara River
Date 2014-3-26
Genbank Assembly Accession GCA_000600295.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source a microcosm of filter-sterilized Niagara River water spiked with Yersinia pestis A1122
Latitude Longitude None
Molecule Count N/A
CDS Count 3,468
Refseq Category na
Seq Rel Date 2014/03/26
Spanned Gaps 16
Species Taxid 80880
SSU Count 1
Submitter CUBRC
Taxid 1458275
Total Gap Length 14074
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JEMG00000000.1