Escherichia coli_D
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli_D
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers UCD_JA69
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000026325.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.09%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 4
23S Count 6
tRNA Count 20
Contig Count 102
N50 Contigs 198,017 bp
Longest Contig 423,312 bp
Scaffold Count 102
N50 Scaffolds 198,017 bp
Longest Scaffold 423,312 bp
Genome Size 5,203,662 bp
Protein Count 4,938
Coding Density 87.92%
GC Percentage 50.56%
Ambiguous Bases N/A
GTDB representative GCA_000026325.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name a5_miseq_linux_20140113
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02650901
Country USA: UC Davis Medical Center
Date 2014-03-24
Genbank Assembly Accession GCA_000599825.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Blood
Latitude Longitude 38.5549000 N 121.4565000 W
Molecule Count N/A
CDS Count 5,425
Refseq Category na
Seq Rel Date 2014/03/24
Spanned Gaps 0
Species Taxid 562
SSU Count 8
Submitter UC Davis
Taxid 562
Total Gap Length 0
Translation Table 11
tRNA Count (total) 84
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JFFO00000000.1