Escherichia flexneri
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers ST540
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.97%
CheckM Strain Heterogeneity 91.67
5S Count 9
16S Count 11
23S Count 11
tRNA Count 20
Contig Count 1
N50 Contigs 4,875,682 bp
Longest Contig 4,875,682 bp
Scaffold Count 1
N50 Scaffolds 4,875,682 bp
Longest Scaffold 4,875,682 bp
Genome Size 4,875,682 bp
Protein Count 4,665
Coding Density 87.26%
GC Percentage 51.02%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM59964v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02666695
Country Belgium
Date 2014-03-19
Genbank Assembly Accession GCA_000599645.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source water
Latitude Longitude None
Molecule Count 1
CDS Count 4,986
Refseq Category na
Seq Rel Date 2014/03/19
Spanned Gaps 0
Species Taxid 562
SSU Count 10
Submitter University of Antwerpen
Taxid 562
Total Gap Length 0
Translation Table 11
tRNA Count (total) 99
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master None