Rhodococcus opacus
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Rhodococcus; s__Rhodococcus opacus
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Nocardiaceae; g__Rhodococcus; s__Rhodococcus opacus
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Nocardiaceae; g__Rhodococcus; s__Rhodococcus opacus; x__Rhodococcus opacus PD630
NCBI Strain Identifiers PD630
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001646735.1)
Genome Characteristics
CheckM Completeness 99.36%
CheckM Contamination 1.8%
CheckM Strain Heterogeneity 25.0
5S Count 4
16S Count 4
23S Count 4
tRNA Count 20
Contig Count 10
N50 Contigs 8,376,953 bp
Longest Contig 8,376,953 bp
Scaffold Count 10
N50 Scaffolds 8,376,953 bp
Longest Scaffold 8,376,953 bp
Genome Size 9,169,032 bp
Protein Count 8,426
Coding Density 89.72%
GC Percentage 67.17%
Ambiguous Bases N/A
GTDB representative GCA_001646735.1
GTDB representative of species False
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM59954v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03081444
Country None
Date 2014-2-28
Genbank Assembly Accession GCA_000599545.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count 10
CDS Count 8,335
Refseq Category na
Seq Rel Date 2014/02/28
Spanned Gaps 0
Species Taxid 37919
SSU Count 4
Submitter Institue of Biophysics,Chinese Academy of Sciences
Taxid 543736
Total Gap Length 0
Translation Table 11
tRNA Count (total) 52
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master None