Bacteroides fragilis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Bacteroidales; f__Bacteroidaceae; g__Bacteroides; s__Bacteroides fragilis
Filtered NCBI Taxonomy d__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Bacteroidaceae; g__Bacteroides; s__Bacteroides fragilis
Unfiltered NCBI Taxonomy d__Bacteria; x__FCB group; x__Bacteroidetes/Chlorobi group; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Bacteroidaceae; g__Bacteroides; s__Bacteroides fragilis; x__Bacteroides fragilis str. 3719 T6
NCBI Strain Identifiers 3719 T6
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000025985.1)
Genome Characteristics
CheckM Completeness 99.26%
CheckM Contamination 0.39%
CheckM Strain Heterogeneity 100.0
5S Count 6
16S Count 4
23S Count 2
tRNA Count 20
Contig Count 64
N50 Contigs 338,507 bp
Longest Contig 650,508 bp
Scaffold Count 64
N50 Scaffolds 338,507 bp
Longest Scaffold 650,508 bp
Genome Size 4,986,076 bp
Protein Count 4,227
Coding Density 89.05%
GC Percentage 43.19%
Ambiguous Bases N/A
GTDB representative GCA_000025985.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM59872v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02314530
Country None
Date 2014-3-20
Genbank Assembly Accession GCA_000598725.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,418
Refseq Category na
Seq Rel Date 2014/03/20
Spanned Gaps 0
Species Taxid 817
SSU Count 5
Submitter IGS
Taxid 1339306
Total Gap Length 0
Translation Table 11
tRNA Count (total) 86
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JGEH00000000.1