Pseudomonas_E syringae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E syringae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas syringae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas syringae group; x__Pseudomonas syringae group genomosp. 1; s__Pseudomonas syringae; x__Pseudomonas syringae DSM 10604
NCBI Strain Identifiers DSM 10604
GTDB Type Material Designation type strain of species
GTDB Representative of Species False (representative is GCA_000507185.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.76%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 84
N50 Contigs 142,141 bp
Longest Contig 422,665 bp
Scaffold Count 84
N50 Scaffolds 142,141 bp
Longest Scaffold 422,665 bp
Genome Size 6,072,447 bp
Protein Count 5,231
Coding Density 88.78%
GC Percentage 58.96%
Ambiguous Bases N/A
GTDB representative GCA_000507185.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name PSSRIMT-15J14
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02952971
Country None
Date 2014-02-25
Genbank Assembly Accession GCA_000597765.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,376
Refseq Category na
Seq Rel Date 2014/02/25
Spanned Gaps 0
Species Taxid 317
SSU Count 1
Submitter Institute of Microbial Technology
Taxid 1449349
Total Gap Length 0
Translation Table 11
tRNA Count (total) 59
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master JALK00000000.1