Vibrio parahaemolyticus
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio parahaemolyticus
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio parahaemolyticus
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; x__Vibrio harveyi group; s__Vibrio parahaemolyticus; x__Vibrio parahaemolyticus VPCR-2009
NCBI Strain Identifiers VPCR-2009
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001558495.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.12%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 4
23S Count 7
tRNA Count 20
Contig Count 191
N50 Contigs 92,465 bp
Longest Contig 404,859 bp
Scaffold Count 109
N50 Scaffolds 391,331 bp
Longest Scaffold 610,823 bp
Genome Size 5,101,835 bp
Protein Count 4,686
Coding Density 86.38%
GC Percentage 45.32%
Ambiguous Bases N/A
GTDB representative GCA_001558495.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name vpVPCR2009
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN01940374
Country USA
Date 2014-3-26
Genbank Assembly Accession GCA_000593305.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source water
Latitude Longitude None
Molecule Count N/A
CDS Count 4,877
Refseq Category na
Seq Rel Date 2014/03/26
Spanned Gaps 82
Species Taxid 670
SSU Count 6
Submitter IGS
Taxid 1238223
Total Gap Length 11442
Translation Table 11
tRNA Count (total) 114
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JDFL00000000.1