Vibrio parahaemolyticus
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio parahaemolyticus
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio parahaemolyticus
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; x__Vibrio harveyi group; s__Vibrio parahaemolyticus; x__Vibrio parahaemolyticus TUMSAT_H10_S6
NCBI Strain Identifiers TUMSAT_H10_S6
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001558495.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.31%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 1
23S Count 3
tRNA Count 19
Contig Count 73
N50 Contigs 294,767 bp
Longest Contig 524,550 bp
Scaffold Count 64
N50 Scaffolds 329,189 bp
Longest Scaffold 910,293 bp
Genome Size 5,213,844 bp
Protein Count 4,695
Coding Density 86.81%
GC Percentage 45.18%
Ambiguous Bases 10
GTDB representative GCA_001558495.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM59155v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMD00009557
Country None
Date 2014-03-11
Genbank Assembly Accession GCA_000591555.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,887
Refseq Category na
Seq Rel Date 2014/03/11
Spanned Gaps 9
Species Taxid 670
SSU Count 1
Submitter Tokyo University of Marine Science and Technology
Taxid 1441612
Total Gap Length 1226
Translation Table 11
tRNA Count (total) 108
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master BAVK00000000.1