Helicobacter pylori_C
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori_C
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; x__delta/epsilon subdivisions; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori; x__Helicobacter pylori wls-5-5
NCBI Strain Identifiers wls-5-5
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000277405.1)
Genome Characteristics
CheckM Completeness 99.36%
CheckM Contamination 0.34%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 88
N50 Contigs 42,391 bp
Longest Contig 79,492 bp
Scaffold Count 88
N50 Scaffolds 42,391 bp
Longest Scaffold 79,492 bp
Genome Size 1,565,074 bp
Protein Count 1,533
Coding Density 91.61%
GC Percentage 38.82%
Ambiguous Bases N/A
GTDB representative GCA_000277405.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name wls-5-5
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02639403
Country China: Zhejiang
Date 2014-03-17
Genbank Assembly Accession GCA_000591275.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source gastroscopic antral biopsy specimen
Latitude Longitude None
Molecule Count N/A
CDS Count 1,535
Refseq Category na
Seq Rel Date 2014/03/17
Spanned Gaps 0
Species Taxid 210
SSU Count 1
Submitter Academy of Military Medical Sciences
Taxid 1460423
Total Gap Length 0
Translation Table 11
tRNA Count (total) 36
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JDVU00000000.1