Clostridioides difficile
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes_A; c__Clostridia; o__Peptostreptococcales; f__Peptostreptococcaceae; g__Clostridioides; s__Clostridioides difficile
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Peptostreptococcaceae; g__Clostridioides; s__Clostridioides difficile
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Peptostreptococcaceae; g__Clostridioides; s__Clostridioides difficile; x__Clostridioides difficile 5.3
NCBI Strain Identifiers 5.3
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000438845.1)
Genome Characteristics
CheckM Completeness 99.51%
CheckM Contamination 0.37%
CheckM Strain Heterogeneity 0.0
5S Count 10
16S Count 8
23S Count 11
tRNA Count 20
Contig Count 27
N50 Contigs 786,725 bp
Longest Contig 1,447,561 bp
Scaffold Count 27
N50 Scaffolds 786,725 bp
Longest Scaffold 1,447,561 bp
Genome Size 4,009,318 bp
Protein Count 3,600
Coding Density 83.58%
GC Percentage 28.32%
Ambiguous Bases N/A
GTDB representative GCA_000438845.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name WHS13_S12
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02472442
Country Australia: NSW
Date 2014-03-10
Genbank Assembly Accession GCA_000586575.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source human feces
Latitude Longitude 33.8600 S 151.2111 E
Molecule Count N/A
CDS Count 3,643
Refseq Category na
Seq Rel Date 2014/03/10
Spanned Gaps 0
Species Taxid 1496
SSU Count 18
Submitter ithree institute, University of Technology Sydney
Taxid 1440056
Total Gap Length 0
Translation Table 11
tRNA Count (total) 81
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AZSH00000000.1