Listeria monocytogenes
Isolate HQ 16S/23S 14 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Listeriaceae; g__Listeria; s__Listeria monocytogenes
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Listeriaceae; g__Listeria; s__Listeria monocytogenes
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Bacillales; f__Listeriaceae; g__Listeria; s__Listeria monocytogenes; x__Listeria monocytogenes Lm_1889
NCBI Strain Identifiers Lm_1889
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900187225.1)
Genome Characteristics
CheckM Completeness 99.45%
CheckM Contamination 0.27%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 2
tRNA Count 14
Contig Count 65
N50 Contigs 98,937 bp
Longest Contig 275,519 bp
Scaffold Count 28
N50 Scaffolds 201,532 bp
Longest Scaffold 411,218 bp
Genome Size 3,029,934 bp
Protein Count 2,967
Coding Density 88.82%
GC Percentage 37.85%
Ambiguous Bases N/A
GTDB representative GCA_900187225.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Lm1889
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02412416
Country Italy
Date 2014-3-6
Genbank Assembly Accession GCA_000585835.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source cheese
Latitude Longitude 40.178873 N 17.753906 E
Molecule Count N/A
CDS Count 3,037
Refseq Category na
Seq Rel Date 2014/03/06
Spanned Gaps 37
Species Taxid 1639
SSU Count 1
Submitter University of Milan
Taxid 1425340
Total Gap Length 21475
Translation Table 11
tRNA Count (total) 28
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AZIY00000000.1