Agrilactobacillus composti
Isolate HQ 16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Agrilactobacillus; s__Agrilactobacillus composti
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus composti
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus composti; x__Lactobacillus composti DSM 18527 = JCM 14202
NCBI Strain Identifiers JCM 14202
GTDB Type Material Designation type strain of species
GTDB Representative of Species False (representative is GCA_001436375.1)
Genome Characteristics
CheckM Completeness 95.92%
CheckM Contamination 0.52%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 2
23S Count 1
tRNA Count 19
Contig Count 94
N50 Contigs 87,613 bp
Longest Contig 210,006 bp
Scaffold Count 94
N50 Scaffolds 87,613 bp
Longest Scaffold 210,006 bp
Genome Size 3,449,704 bp
Protein Count 3,987
Coding Density 87.51%
GC Percentage 43.94%
Ambiguous Bases N/A
GTDB representative GCA_001436375.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM58369v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMD00003395
Country None
Date 2014-2-26
Genbank Assembly Accession GCA_000583695.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 3,439
Refseq Category representative genome
Seq Rel Date 2014/02/26
Spanned Gaps 0
Species Taxid 398555
SSU Count 2
Submitter The University of Tokyo
Taxid 1423734
Total Gap Length 0
Translation Table 11
tRNA Count (total) 47
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master BAMK00000000.1