Bordetella holmesii
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Bordetella; s__Bordetella holmesii
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella holmesii
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella holmesii; x__Bordetella holmesii 30539
NCBI Strain Identifiers 30539
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000612485.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 2.03%
CheckM Strain Heterogeneity 100.0
5S Count 4
16S Count 4
23S Count 5
tRNA Count 20
Contig Count 9
N50 Contigs 1,889,781 bp
Longest Contig 1,889,781 bp
Scaffold Count 9
N50 Scaffolds 1,889,781 bp
Longest Scaffold 1,889,781 bp
Genome Size 3,762,889 bp
Protein Count 3,763
Coding Density 90.18%
GC Percentage 62.65%
Ambiguous Bases N/A
GTDB representative GCA_000612485.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name gbhBH001
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02190084
Country None
Date 2014-2-27
Genbank Assembly Accession GCA_000583025.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 3,653
Refseq Category na
Seq Rel Date 2014/02/27
Spanned Gaps 0
Species Taxid 35814
SSU Count 4
Submitter Institute for Genome Sciences
Taxid 1247644
Total Gap Length 0
Translation Table 11
tRNA Count (total) 59
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JDFP00000000.1