Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli MP1
NCBI Strain Identifiers MP1
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.25%
CheckM Strain Heterogeneity 52.63
5S Count 8
16S Count 4
23S Count 5
tRNA Count 20
Contig Count 77
N50 Contigs 217,538 bp
Longest Contig 652,794 bp
Scaffold Count 77
N50 Scaffolds 217,538 bp
Longest Scaffold 652,794 bp
Genome Size 4,765,458 bp
Protein Count 4,445
Coding Density 88.10%
GC Percentage 50.63%
Ambiguous Bases 1
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name MP1_1.0
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN01998190
Country None
Date 2014-2-24
Genbank Assembly Accession GCA_000576655.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,816
Refseq Category na
Seq Rel Date 2014/02/24
Spanned Gaps 0
Species Taxid 562
SSU Count 9
Submitter University of Pennsylvania
Taxid 1314835
Total Gap Length 0
Translation Table 11
tRNA Count (total) 81
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JEMI00000000.1