Sphingobium indicum
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Sphingobium; s__Sphingobium indicum
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Sphingomonas; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Sphingomonas; s__Sphingomonas sp. BHC-A
NCBI Strain Identifiers BHC-A
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000264945.2)
Genome Characteristics
CheckM Completeness 92.99%
CheckM Contamination 0.56%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 2
tRNA Count 20
Contig Count 954
N50 Contigs 8,906 bp
Longest Contig 66,469 bp
Scaffold Count 362
N50 Scaffolds 38,646 bp
Longest Scaffold 132,651 bp
Genome Size 3,887,662 bp
Protein Count 3,930
Coding Density 84.04%
GC Percentage 65.11%
Ambiguous Bases N/A
GTDB representative GCA_000264945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM57645v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02592718
Country China
Date 2014-7-22
Genbank Assembly Accession GCA_000576455.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source soil
Latitude Longitude 32.05 N 118.766667 E
Molecule Count N/A
CDS Count 3,830
Refseq Category na
Seq Rel Date 2014/07/22
Spanned Gaps 592
Species Taxid 322611
SSU Count 1
Submitter Nanjing Agricultural University
Taxid 322611
Total Gap Length 55856
Translation Table 11
tRNA Count (total) 49
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JDRU00000000.2