Staphylococcus aureus
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Staphylococcales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Bacillales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus; x__Staphylococcus aureus M1238
NCBI Strain Identifiers M1238
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001027105.1)
Genome Characteristics
CheckM Completeness 99.51%
CheckM Contamination 0.21%
CheckM Strain Heterogeneity 66.67
5S Count 0
16S Count 5
23S Count 4
tRNA Count 20
Contig Count 70
N50 Contigs 143,741 bp
Longest Contig 389,010 bp
Scaffold Count 66
N50 Scaffolds 154,335 bp
Longest Scaffold 389,010 bp
Genome Size 2,890,641 bp
Protein Count 2,726
Coding Density 83.82%
GC Percentage 32.86%
Ambiguous Bases N/A
GTDB representative GCA_001027105.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Stap_aure_M1238_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02360892
Country USA: Boston; MA; USA
Date 2014-2-19
Genbank Assembly Accession GCA_000574465.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source nares
Latitude Longitude None
Molecule Count N/A
CDS Count 2,994
Refseq Category na
Seq Rel Date 2014/02/19
Spanned Gaps 4
Species Taxid 1280
SSU Count 5
Submitter Broad Institute
Taxid 1402735
Total Gap Length 400
Translation Table 11
tRNA Count (total) 58
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JEIQ00000000.1