Staphylococcus aureus
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Staphylococcales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Bacillales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus; x__Staphylococcus aureus HOAG6043
NCBI Strain Identifiers HOAG6043
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001027105.1)
Genome Characteristics
CheckM Completeness 99.51%
CheckM Contamination 0.08%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 3
23S Count 7
tRNA Count 20
Contig Count 34
N50 Contigs 394,230 bp
Longest Contig 571,770 bp
Scaffold Count 14
N50 Scaffolds 505,692 bp
Longest Scaffold 847,956 bp
Genome Size 2,946,811 bp
Protein Count 2,667
Coding Density 81.72%
GC Percentage 32.83%
Ambiguous Bases N/A
GTDB representative GCA_001027105.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Stap_aure_HOAG6043_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02381611
Country USA: Irvine; CA
Date 2014-2-19
Genbank Assembly Accession GCA_000572725.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 2,938
Refseq Category na
Seq Rel Date 2014/02/19
Spanned Gaps 20
Species Taxid 1280
SSU Count 2
Submitter Broad Institute
Taxid 1409550
Total Gap Length 61960
Translation Table 11
tRNA Count (total) 62
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JDXQ00000000.1