Staphylococcus aureus
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Staphylococcales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Bacillales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus; x__Staphylococcus aureus SJOS6123
NCBI Strain Identifiers SJOS6123
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001027105.1)
Genome Characteristics
CheckM Completeness 99.51%
CheckM Contamination 0.08%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 5
23S Count 6
tRNA Count 20
Contig Count 19
N50 Contigs 427,654 bp
Longest Contig 571,589 bp
Scaffold Count 11
N50 Scaffolds 642,641 bp
Longest Scaffold 820,534 bp
Genome Size 2,895,818 bp
Protein Count 2,687
Coding Density 83.60%
GC Percentage 32.79%
Ambiguous Bases N/A
GTDB representative GCA_001027105.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Stap_aure_SJOS6123_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02381626
Country USA: Irvine; CA
Date 2014-2-19
Genbank Assembly Accession GCA_000572685.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Blood
Latitude Longitude None
Molecule Count N/A
CDS Count 2,963
Refseq Category na
Seq Rel Date 2014/02/19
Spanned Gaps 8
Species Taxid 1280
SSU Count 4
Submitter Broad Institute
Taxid 1409565
Total Gap Length 7259
Translation Table 11
tRNA Count (total) 58
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JDXO00000000.1