Ruminococcus flavefaciens_F
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes_A; c__Clostridia; o__Oscillospirales; f__Ruminococcaceae; g__Ruminococcus; s__Ruminococcus flavefaciens_F
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Ruminococcaceae; g__Ruminococcus; s__Ruminococcus flavefaciens
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Ruminococcaceae; g__Ruminococcus; s__Ruminococcus flavefaciens; x__Ruminococcus flavefaciens 007c
NCBI Strain Identifiers 007c
GTDB Type Material Designation not type material
GTDB Representative of Species True (3 genomes in species cluster)
Genome Characteristics
CheckM Completeness 98.99%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 2
tRNA Count 20
Contig Count 39
N50 Contigs 197,742 bp
Longest Contig 540,823 bp
Scaffold Count 39
N50 Scaffolds 197,742 bp
Longest Scaffold 540,823 bp
Genome Size 3,649,758 bp
Protein Count 3,168
Coding Density 88.98%
GC Percentage 45.48%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name Rf007c
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02952951
Country None
Date 2014-2-14
Genbank Assembly Accession GCA_000571935.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source rumen
Latitude Longitude None
Molecule Count N/A
CDS Count 3,172
Refseq Category na
Seq Rel Date 2014/02/14
Spanned Gaps 0
Species Taxid 1265
SSU Count 1
Submitter Weizmann Institute of Science
Taxid 1341157
Total Gap Length 0
Translation Table 11
tRNA Count (total) 52
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ATAX00000000.1