Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Xanthobacteraceae; g__Afipia; s__Afipia broomeae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Bradyrhizobiaceae; g__Afipia; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Bradyrhizobiaceae; g__Afipia; s__Afipia sp. NBIMC_P1-C2
NCBI Strain Identifiers NBIMC_P1-C2
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000314675.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.95%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 66
N50 Contigs 223,703 bp
Longest Contig 548,545 bp
Scaffold Count 66
N50 Scaffolds 223,703 bp
Longest Scaffold 548,545 bp
Genome Size 4,996,867 bp
Protein Count 4,799
Coding Density 88.13%
GC Percentage 61.56%
Ambiguous Bases N/A
GTDB representative GCA_000314675.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name NBIMC_P1-C2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02951892
Country USA
Date 2014-02-12
Genbank Assembly Accession GCA_000568615.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source blood
Latitude Longitude None
Molecule Count N/A
CDS Count 4,770
Refseq Category na
Seq Rel Date 2014/02/12
Spanned Gaps 0
Species Taxid 1320553
SSU Count 1
Submitter FDA
Taxid 1320553
Total Gap Length 0
Translation Table 11
tRNA Count (total) 46
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AVBL00000000.1