Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Xanthobacteraceae; g__Afipia; s__Afipia broomeae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Bradyrhizobiaceae; g__Afipia; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Bradyrhizobiaceae; g__Afipia; s__Afipia sp. NBIMC_P1-C1
NCBI Strain Identifiers NBIMC_P1-C1
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000314675.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 1.27%
CheckM Strain Heterogeneity 20.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 90
N50 Contigs 128,446 bp
Longest Contig 402,855 bp
Scaffold Count 90
N50 Scaffolds 128,446 bp
Longest Scaffold 402,855 bp
Genome Size 5,133,308 bp
Protein Count 4,945
Coding Density 88.08%
GC Percentage 61.59%
Ambiguous Bases N/A
GTDB representative GCA_000314675.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name NBIMC_P1-C1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02951891
Country USA
Date 2014-02-12
Genbank Assembly Accession GCA_000568595.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source blood
Latitude Longitude None
Molecule Count N/A
CDS Count 4,917
Refseq Category na
Seq Rel Date 2014/02/12
Spanned Gaps 0
Species Taxid 1320552
SSU Count 1
Submitter FDA
Taxid 1320552
Total Gap Length 0
Translation Table 11
tRNA Count (total) 46
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AVBK00000000.1