Pseudomonas aeruginosa
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas aeruginosa group; s__Pseudomonas aeruginosa; x__Pseudomonas aeruginosa RB-48
NCBI Strain Identifiers RB-48
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457615.1)
Genome Characteristics
CheckM Completeness 99.66%
CheckM Contamination 0.11%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 2
23S Count 1
tRNA Count 20
Contig Count 183
N50 Contigs 106,392 bp
Longest Contig 501,972 bp
Scaffold Count 183
N50 Scaffolds 106,392 bp
Longest Scaffold 501,972 bp
Genome Size 6,175,056 bp
Protein Count 5,756
Coding Density 89.87%
GC Percentage 66.54%
Ambiguous Bases N/A
GTDB representative GCA_001457615.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name De Novo Assembly
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02487176
Country Malaysia
Date 2014-02-10
Genbank Assembly Accession GCA_000568115.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source soil
Latitude Longitude 3.003361 N 101.659194 E
Molecule Count N/A
CDS Count 5,903
Refseq Category na
Seq Rel Date 2014/02/10
Spanned Gaps 0
Species Taxid 287
SSU Count 2
Submitter UNIVERSITY OF MALAYA
Taxid 1441928
Total Gap Length 0
Translation Table 11
tRNA Count (total) 57
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AZYL00000000.1