Klebsiella pneumoniae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Klebsiella; s__Klebsiella pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Klebsiella; s__Klebsiella pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Klebsiella; s__Klebsiella pneumoniae; x__Klebsiella pneumoniae BIDMC 47
NCBI Strain Identifiers BIDMC 47
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000742135.1)
Genome Characteristics
CheckM Completeness 99.7%
CheckM Contamination 0.48%
CheckM Strain Heterogeneity 0.0
5S Count 8
16S Count 11
23S Count 12
tRNA Count 20
Contig Count 27
N50 Contigs 372,199 bp
Longest Contig 933,236 bp
Scaffold Count 8
N50 Scaffolds 2,891,624 bp
Longest Scaffold 2,891,624 bp
Genome Size 5,337,242 bp
Protein Count 4,942
Coding Density 87.06%
GC Percentage 57.46%
Ambiguous Bases 1
GTDB representative GCA_000742135.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Kleb_pneu_BIDMC_47_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02356586
Country USA: Boston; MA
Date 2014-02-07
Genbank Assembly Accession GCA_000567125.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source URINE
Latitude Longitude None
Molecule Count N/A
CDS Count 5,256
Refseq Category na
Seq Rel Date 2014/02/07
Spanned Gaps 19
Species Taxid 573
SSU Count 9
Submitter Broad Institute
Taxid 1400165
Total Gap Length 14720
Translation Table 11
tRNA Count (total) 85
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JCMR00000000.1