Escherichia flexneri
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Shigella; s__Shigella flexneri
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Shigella; s__Shigella flexneri; x__Shigella flexneri 2001004
NCBI Strain Identifiers 2001004
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 98.98%
CheckM Contamination 0.43%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 347
N50 Contigs 26,291 bp
Longest Contig 136,938 bp
Scaffold Count 291
N50 Scaffolds 33,516 bp
Longest Scaffold 136,938 bp
Genome Size 4,446,183 bp
Protein Count 4,482
Coding Density 85.70%
GC Percentage 50.48%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM56610v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02437393
Country China
Date 2014-01-29
Genbank Assembly Accession GCA_000566105.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool sample
Latitude Longitude None
Molecule Count N/A
CDS Count 4,916
Refseq Category na
Seq Rel Date 2014/01/29
Spanned Gaps 56
Species Taxid 623
SSU Count 1
Submitter Chinese Center for Disease Control and Prevention (China CDC)
Taxid 1434158
Total Gap Length 6862
Translation Table 11
tRNA Count (total) 80
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AZPK00000000.1