Escherichia flexneri
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Shigella; s__Shigella flexneri
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Shigella; s__Shigella flexneri; x__Shigella flexneri Shi06HN023
NCBI Strain Identifiers Shi06HN023
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.43%
CheckM Contamination 0.33%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 326
N50 Contigs 29,511 bp
Longest Contig 95,241 bp
Scaffold Count 299
N50 Scaffolds 30,162 bp
Longest Scaffold 137,063 bp
Genome Size 4,441,056 bp
Protein Count 4,477
Coding Density 86.07%
GC Percentage 50.43%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM56562v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02437369
Country China
Date 2014-01-29
Genbank Assembly Accession GCA_000565625.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool sample
Latitude Longitude None
Molecule Count N/A
CDS Count 4,879
Refseq Category na
Seq Rel Date 2014/01/29
Spanned Gaps 27
Species Taxid 623
SSU Count 1
Submitter Chinese Center for Disease Control and Prevention (China CDC)
Taxid 1434134
Total Gap Length 3981
Translation Table 11
tRNA Count (total) 80
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AZOM00000000.1