Staphylococcus aureus
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Staphylococcales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Bacillales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus; x__Staphylococcus aureus W52117
NCBI Strain Identifiers W52117
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001027105.1)
Genome Characteristics
CheckM Completeness 99.23%
CheckM Contamination 0.11%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 3
23S Count 2
tRNA Count 20
Contig Count 49
N50 Contigs 97,042 bp
Longest Contig 235,250 bp
Scaffold Count 46
N50 Scaffolds 102,647 bp
Longest Scaffold 235,250 bp
Genome Size 2,823,994 bp
Protein Count 2,637
Coding Density 84.04%
GC Percentage 32.80%
Ambiguous Bases N/A
GTDB representative GCA_001027105.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Stap_aure_W52117_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02384137
Country USA: Irvine; CA
Date 2014-2-6
Genbank Assembly Accession GCA_000564565.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 2,890
Refseq Category na
Seq Rel Date 2014/02/06
Spanned Gaps 3
Species Taxid 1280
SSU Count 3
Submitter Broad Institute
Taxid 1411591
Total Gap Length 321
Translation Table 11
tRNA Count (total) 59
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JDRF00000000.1