Staphylococcus aureus
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Staphylococcales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Bacillales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus; x__Staphylococcus aureus W52104
NCBI Strain Identifiers W52104
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001027105.1)
Genome Characteristics
CheckM Completeness 99.41%
CheckM Contamination 0.08%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 3
23S Count 2
tRNA Count 20
Contig Count 73
N50 Contigs 89,095 bp
Longest Contig 208,339 bp
Scaffold Count 69
N50 Scaffolds 103,944 bp
Longest Scaffold 208,339 bp
Genome Size 2,856,359 bp
Protein Count 2,709
Coding Density 84.11%
GC Percentage 32.78%
Ambiguous Bases N/A
GTDB representative GCA_001027105.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Stap_aure_W52104_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02384136
Country USA: Irvine; CA
Date 2014-2-6
Genbank Assembly Accession GCA_000564545.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 2,950
Refseq Category na
Seq Rel Date 2014/02/06
Spanned Gaps 4
Species Taxid 1280
SSU Count 3
Submitter Broad Institute
Taxid 1411590
Total Gap Length 765
Translation Table 11
tRNA Count (total) 55
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JDRE00000000.1