Staphylococcus aureus
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Staphylococcales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Bacillales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus; x__Staphylococcus aureus T81559
NCBI Strain Identifiers T81559
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001027105.1)
Genome Characteristics
CheckM Completeness 99.51%
CheckM Contamination 0.14%
CheckM Strain Heterogeneity 66.67
5S Count 0
16S Count 3
23S Count 2
tRNA Count 20
Contig Count 87
N50 Contigs 96,967 bp
Longest Contig 222,847 bp
Scaffold Count 81
N50 Scaffolds 104,055 bp
Longest Scaffold 324,343 bp
Genome Size 2,891,215 bp
Protein Count 2,743
Coding Density 84.20%
GC Percentage 32.76%
Ambiguous Bases N/A
GTDB representative GCA_001027105.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Stap_aure_T81559_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02383778
Country USA: Irvine; CA
Date 2014-2-6
Genbank Assembly Accession GCA_000562225.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Nares
Latitude Longitude None
Molecule Count N/A
CDS Count 2,988
Refseq Category na
Seq Rel Date 2014/02/06
Spanned Gaps 6
Species Taxid 1280
SSU Count 3
Submitter Broad Institute
Taxid 1410858
Total Gap Length 825
Translation Table 11
tRNA Count (total) 57
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JDMS00000000.1