Ochrobactrum_A pituitosum
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Rhizobiaceae; g__Ochrobactrum_A; s__Ochrobactrum_A pituitosum
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Brucellaceae; g__Ochrobactrum; s__Ochrobactrum rhizosphaerae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Brucellaceae; g__Ochrobactrum; s__Ochrobactrum rhizosphaerae; x__Ochrobactrum rhizosphaerae SJY1
NCBI Strain Identifiers SJY1
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003049685.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.43%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 3
23S Count 3
tRNA Count 20
Contig Count 198
N50 Contigs 107,455 bp
Longest Contig 471,969 bp
Scaffold Count 198
N50 Scaffolds 107,455 bp
Longest Scaffold 471,969 bp
Genome Size 5,245,769 bp
Protein Count 5,211
Coding Density 87.84%
GC Percentage 54.17%
Ambiguous Bases N/A
GTDB representative GCA_003049685.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name SJY1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02952963
Country China
Date 2014-02-05
Genbank Assembly Accession GCA_000559065.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source water
Latitude Longitude None
Molecule Count N/A
CDS Count 5,134
Refseq Category na
Seq Rel Date 2014/02/05
Spanned Gaps 0
Species Taxid 571254
SSU Count 3
Submitter State Key Laboratory of Microbial Metabolism, and School of Life Sciences & Biotechnology, Shanghai Jiao Tong University
Taxid 1437448
Total Gap Length 0
Translation Table 11
tRNA Count (total) 49
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AZRT00000000.1