Staphylococcus aureus
Isolate HQ 16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Staphylococcales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Bacillales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus; x__Staphylococcus aureus M0005
NCBI Strain Identifiers M0005
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001027105.1)
Genome Characteristics
CheckM Completeness 99.51%
CheckM Contamination 0.08%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 3
23S Count 11
tRNA Count 19
Contig Count 52
N50 Contigs 221,166 bp
Longest Contig 416,234 bp
Scaffold Count 49
N50 Scaffolds 225,200 bp
Longest Scaffold 569,986 bp
Genome Size 2,866,552 bp
Protein Count 2,678
Coding Density 84.19%
GC Percentage 32.85%
Ambiguous Bases N/A
GTDB representative GCA_001027105.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Stap_aure_M0005_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02325111
Country USA: Boston; MA
Date 2014-2-5
Genbank Assembly Accession GCA_000550865.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source sputum
Latitude Longitude None
Molecule Count N/A
CDS Count 2,938
Refseq Category na
Seq Rel Date 2014/02/05
Spanned Gaps 3
Species Taxid 1280
SSU Count 8
Submitter Broad Institute
Taxid 1387987
Total Gap Length 377
Translation Table 11
tRNA Count (total) 56
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JBVI00000000.1