Staphylococcus aureus
Isolate HQ 16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Staphylococcales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Bacillales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus; x__Staphylococcus aureus M1090
NCBI Strain Identifiers M1090
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001027105.1)
Genome Characteristics
CheckM Completeness 99.51%
CheckM Contamination 1.24%
CheckM Strain Heterogeneity 50.0
5S Count 0
16S Count 6
23S Count 5
tRNA Count 19
Contig Count 51
N50 Contigs 177,144 bp
Longest Contig 434,202 bp
Scaffold Count 50
N50 Scaffolds 213,245 bp
Longest Scaffold 434,202 bp
Genome Size 2,859,139 bp
Protein Count 2,684
Coding Density 83.75%
GC Percentage 32.82%
Ambiguous Bases N/A
GTDB representative GCA_001027105.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Stap_aure_M1090_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02334693
Country USA: Boston; MA
Date 2014-2-4
Genbank Assembly Accession GCA_000547205.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source nares
Latitude Longitude None
Molecule Count N/A
CDS Count 2,940
Refseq Category na
Seq Rel Date 2014/02/04
Spanned Gaps 1
Species Taxid 1280
SSU Count 6
Submitter Broad Institute
Taxid 1392085
Total Gap Length 100
Translation Table 11
tRNA Count (total) 56
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JCVM00000000.1