Staphylococcus aureus
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Staphylococcales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Bacillales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus; x__Staphylococcus aureus M1043
NCBI Strain Identifiers M1043
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001027105.1)
Genome Characteristics
CheckM Completeness 99.51%
CheckM Contamination 0.82%
CheckM Strain Heterogeneity 80.0
5S Count 0
16S Count 3
23S Count 4
tRNA Count 20
Contig Count 36
N50 Contigs 158,438 bp
Longest Contig 340,882 bp
Scaffold Count 35
N50 Scaffolds 159,434 bp
Longest Scaffold 340,882 bp
Genome Size 2,873,533 bp
Protein Count 2,682
Coding Density 83.95%
GC Percentage 32.81%
Ambiguous Bases N/A
GTDB representative GCA_001027105.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Stap_aure_M1043_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02334659
Country USA: Boston; MA
Date 2014-2-4
Genbank Assembly Accession GCA_000546685.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source blood
Latitude Longitude None
Molecule Count N/A
CDS Count 2,954
Refseq Category na
Seq Rel Date 2014/02/04
Spanned Gaps 1
Species Taxid 1280
SSU Count 5
Submitter Broad Institute
Taxid 1392051
Total Gap Length 339
Translation Table 11
tRNA Count (total) 58
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JCUM00000000.1