Staphylococcus lugdunensis
Isolate HQ 16S/23S 17 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Staphylococcales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus lugdunensis
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus lugdunensis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Bacillales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus lugdunensis; x__Staphylococcus lugdunensis UCIM6116
NCBI Strain Identifiers UCIM6116
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002901705.1)
Genome Characteristics
CheckM Completeness 99.61%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 4
23S Count 3
tRNA Count 17
Contig Count 48
N50 Contigs 105,734 bp
Longest Contig 252,615 bp
Scaffold Count 47
N50 Scaffolds 120,160 bp
Longest Scaffold 252,615 bp
Genome Size 2,554,377 bp
Protein Count 2,413
Coding Density 85.28%
GC Percentage 33.62%
Ambiguous Bases N/A
GTDB representative GCA_002901705.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Stap_lugd_UCIM6116_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02381740
Country USA: Irvine; CA
Date 2014-2-4
Genbank Assembly Accession GCA_000542395.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Blood
Latitude Longitude None
Molecule Count N/A
CDS Count 2,404
Refseq Category na
Seq Rel Date 2014/02/04
Spanned Gaps 1
Species Taxid 28035
SSU Count 4
Submitter Broad Institute
Taxid 1409679
Total Gap Length 100
Translation Table 11
tRNA Count (total) 33
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JBHB00000000.1