Staphylococcus aureus
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Staphylococcales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Bacillales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus; x__Staphylococcus aureus SMMC6108
NCBI Strain Identifiers SMMC6108
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001027105.1)
Genome Characteristics
CheckM Completeness 99.51%
CheckM Contamination 0.08%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 6
23S Count 7
tRNA Count 20
Contig Count 36
N50 Contigs 282,250 bp
Longest Contig 756,312 bp
Scaffold Count 34
N50 Scaffolds 282,250 bp
Longest Scaffold 756,312 bp
Genome Size 2,928,992 bp
Protein Count 2,753
Coding Density 83.69%
GC Percentage 32.87%
Ambiguous Bases N/A
GTDB representative GCA_001027105.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Stap_aure_SMMC6108_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02381690
Country USA: Irvine; CA
Date 2014-2-4
Genbank Assembly Accession GCA_000541575.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Sputum
Latitude Longitude None
Molecule Count N/A
CDS Count 3,010
Refseq Category na
Seq Rel Date 2014/02/04
Spanned Gaps 2
Species Taxid 1280
SSU Count 6
Submitter Broad Institute
Taxid 1409629
Total Gap Length 452
Translation Table 11
tRNA Count (total) 59
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JBIU00000000.1